Our Team

Francesca Grisoni

Associate Professor

Francesca Grisoni is an Associate Professor at the Eindhoven University of Technology, where she leads the Molecular Machine Learning team. After receiving her Ph.D. in 2016 at the University of Milano-Bicocca (Prof. R. Todeschini) with a dissertation on machine learning for (eco)toxicology, Francesca worked as a data scientist and as a biostatistical consultant for the pharmaceutical industry. Later, she joined the University of Milano-Bicocca and the ETH Zurich as a postdoctoral researcher (Prof. G. Schneider), working on machine learning for drug discovery and de novo design. Her team’s research focuses on developing novel chemistry-centred deep learning methods to augment human intelligence in drug discovery, at the interface between computation and wet-lab experiments. Prof. Grisoni has received several grants and awards, such as the FEBS Excellence Award, the Early Career Award from the Dutch Royal Netherlands Academy of Arts and Sciences (KNAW), an NWO Vidi and NWO XL, and an ERC Starting Grant.

Sofia Imperatore

Postdoctoral Fellow

Sofia Imperatore is a mathematician by training with a BSc (2017), MSc (2020), and PhD (2024) in Applied Mathematics from the University of Florence, Italy. During her PhD, she focused on geometric deep learning, combining free-form geometric models with data-driven systems, as well as deep-geometric generative models. After her PhD, she undertook a researcher position at CNR in Pavia, Italy, working on uncertainty quantification via sparse grid surrogate models. In her current role as a Postdoctoral Research Fellow in the Molecular Machine Learning group, she focuses on developing deep protein representations enriched with geometric information for drug discovery.

Sébastien Sueron

Postdoctoral Fellow

Sébastien Sueron is a Postdoctoral Research Fellow in the Molecular Machine Learning group. He holds an MSc in Chemistry from the University of Montpellier, with a background in organic and analytical chemistry. He obtained his PhD in Organic and Medicinal Chemistry in 2024 from the Faculty of Pharmacy at the University of Rennes. His doctoral work focused on hit-to-lead optimisation of a kinase inhibitor showing promising activity in a murine in vivo model, alongside an induced degradation approach on the same therapeutic target. In late 2023, he spent a few months at the University of Gothenburg where he discovered computational chemistry and developed a pipeline to accelerate the identification of functional PROTAC degraders. With an experimental background, he joined the MolML group in 2025 to further explore the computational side of chemistry through AI-driven generative models for drug discovery.

Emanuele Criscuolo

Postdoctoral Fellow

Emanuele Criscuolo studied Chemistry at Sapienza University and Tor Vergata University, in Rome. During his master studies he spent about one year at IRBM Science Park, focusing his work on fragment-based drug discovery. In February 2023, He obtained his Ph.D. cum laude in Biochemistry and Molecular Biology, working in the Department of experimental medicine at the University of Rome Tor Vergata. During his doctoral studies, he discovered his passion for computational techniques, combining them with experimental procedures. In 2021, He has received a short-term FEBS fellowship and he was hosted at Leiden University. One year later, he joined Grisoni’s group in Eindhoven, as guest PhD student, to combine his passion for Molecular Dynamics with Machine Learning. In 2023, he joined the team as a Postdoctoral fellow. 

Cristina Izquierdo Lozano

Postdoctoral Fellow

Cristina Izquierdo Lozano is from Reus, a small town in Catalonia. In 2020, she obtained her BSc in Biotechnology and BENG in Computer Engineering from Universitat Rovira i Virgiliin Tarragona. During her time there, she joined the Nanoscopy for Nanomedicine group at IBEC inBarcelona in 2019, where she conducted both of her bachelor theses, utilizing Correlative Light and Electron Microscopy to characterize polymeric nanoparticles and developing a computer vision application in MATLAB, enabling automatic image correlation between two distinct microscopes. In 2021, she moved to Eindhoven to pursue her PhD in the TU/e, where she graduated in 2025. In her current research, she uses Machine Learning techniques to analyze super-resolution microscopy data.

Andrea Gardin

Postdoctoral Fellow

Andrea Gardin is a Postdoctoral Research Fellow in the Molecular Machine Learning group. He completed his MSc. in Chemistry at the University of Padua, where he focused on computational methods to study complex molecular systems. In October 2023, he earned his Ph.D. in Material Science and Technology from the Polytechnic University of Turin. During his Ph.D., Andrea primarily worked on techniques for detecting and classifying the structural features of various supramolecular materials. Since joining this research group in January 2024, he has been applying machine learning to study and optimize a wide range of supramolecular materials, with a particular focus on, but not limited to, coacervates.

Elena Frasnetti

Postdoctoral Fellow

Elena Frasnetti studied Chemistry at the University of Insubria and the University of Pavia. During her master’s studies, she discovered her passion for computational biochemistry and drug discovery, which led her to pursue a Ph.D. in the same field. The main topic of her doctoral thesis focused on integrating Physics-based methods with Machine Learning algorithms for drug design. During her Ph.D., she spent four months as a guest at the Molecular Machine Learning team, where she worked on the use of Chemical Language Models for the development of allosteric inhibitors. This period sparked her interest in Cheminformatics, leading her to return to the group as a Postdoctoral Fellow, working primarily on active learning for drug discovery.

Barbara Terlouw

Postdoctoral Fellow

Barbara Terlouw is a postdoctoral researcher in Bioinformatics at Wageningen University & Research and at the Eindhoven University of Technology. Her research focuses on structural bioinformatics, machine learning, deep learning, non-ribosomal peptide synthetases, and biosynthetic gene clusters. She completed her PhD at Wageningen University in 2023. She has contributed to several high-profile bioinformatics projects, including the antiSMASH pipeline for predicting biosynthetic gene clusters and the MIBiG database for annotating experimentally validated gene clusters.

Luke Rossen

PhD Candidate

Luke Rossen is a PhD Candidate in the Molecular Machine Learning team. Previously, he joined the group as a Master student at TU/e in the Biomedical Engineering department – Chemical Biology cluster, where he managed and participated in the ‘international genetically engineered machine’ (iGEM) Competition team. His research interests are reflected in a recently completed thesis on active learning for drug discovering using graph neural networks, working at the interface between the wet lab and computational work to efficiently navigate the chemical space. Luke has pursued an internship at the Novartis Institute for Biomedical Research, Switzerland, working on generative deep learning models for molecular (scaffold) design.

Helena Brinkmann

PhD candidate

Helena Brinkmann is a Ph.D. candidate at the Molecular Machine Learning Team. She completed her undergraduate studies in the subjects Mathematics and Chemistry at the Eberhard Karls University Tübingen in Germany. After working as a teacher for two years, she received her MSc degree in Medicinal Chemistry from the University of Gothenburg, where she first applied machine learning for drug discovery. Currently, she focuses on the encoding of chemical information to augment the capabilities of de novo molecule design and chemical space exploration.

Will Vithayapalert

PhD Candidate

Nopsinth (Will) Vithayapalert is a Ph.D. candidate. Will completed his BSc and MSc degrees in Operation Research and Quantitative Finance at Stanford University. Prior to his Ph.D., he worked for tech industry in senior machine learning scientist / engineer roles. His research interest focuses on developing the generative foundational models for bimolecular interactions and dynamics.

Marcel Hiltscher

PhD Candidate

Marcel Hiltscher is a PhD Candidate in the Molecular Machine learning team and at Sanofi (France).

Sarah de Ruiter

PhD Candidate

Sarah de Ruiter is a PhD candidate in the Molecular Machine Learning group. She completed both her bachelor and master degrees in Biomedical Engineering in the group, focusing on structured state space models for de novo drug design and molecular task arithmetic to edit chemical language models, respectively. Prior to her doctoral studies, she completed an internship at IBM Research in Zurich as part of the AI for Scientific Discovery team. During her PhD, Sarah will work on infusing chemical knowledge and intuition into deep learning models to advance drug design methodologies.

Markel Benito Sendin

PhD Candidate

Markel Benito Sendin is a PhD candidate in the Molecular Machine Learning team. Originally from the Basque Country in northern Spain, he obtained a BSc in Biochemistry from the University of Navarra (Spain) and an MSc in Bioinformatics from Utrecht University (the Netherlands). His research focuses on developing a ML–guided framework for the de novo design of hybrid macrocyclic peptides with therapeutic potential, combining deep learning and directed evolution to accelerate drug discovery.

Rıza Özçelik

PhD Candidate

Rıza Özçelik is a Ph.D. candidate in the team. He received his MSc. degree from the Department of Computer Engineering at Boğaziçi University, Turkey, where he applied machine learning to structure-based drug-target affinity prediction. Rıza currently focuses on developing novel generative deep-learning approaches for de novo drug design.

Mateusz Iwan

PhD Candidate

Mateusz Iwan is a PhD Candidate in the MSCA “AiChemist” Doctoral Network, affiliated with the Molecular Machine Learning team in Eindhoven, the Istituto di Ricerche Farmacologiche Mario Negri in Milan, and Bayer AG in Berlin. He holds an MSc in Medicinal Chemistry from Jagiellonian University with a specialisation in Computational Chemistry methods. His current research focuses on developing novel approaches for modelling Drug-Induced Toxicity. Outside of work, Mateusz enjoys playing various musical instruments, reading fantasy books, and practicing historically accurate fencing with longsword and sabre.

Sanne van de Vorst

MSc Student

Sanne van de Vorst is a Master’s student in the Biomedical Engineering Department at TU/e. Her curiosity spans a very wide range of subjects, and she is currently particularly enthusiastic about working with sequential data. Her research focuses on developing chemistry-informed atom-level representations using transformer-based models, evaluating their performance in predicting molecular properties. Prior to joining the team, she completed her bachelor’s degree in Biomedical Engineering. Outside of her research, she likes horse riding, scouting, and is very passionate about outdoor sports like skiing, having even worked as a skiing instructor.

Jens Peeters

MSc Student

Jens Peeters is a Master’s student in the Biomedical Engineering Department at TU/e. His research focuses on integrating quantum chemical information into molecular representations to enhance the performance of machine learning models. Outside of his research, Jens enjoys running, reading and engaging in volunteer work.

Lucas van Osenbruggen

MSc Student

Lucas van Osenbruggen is a Master’s student from Data Science & Artificial Intelligence and Computer Science & Engineering. He is currently researching biosafety of protein language models to help ensure that AI helps human health instead of harming it. Next to his studies he has his own company in business process automation. With the time that remains he likes playing volleyball and scuba diving.

Arthur Monnier

MSc Student

Arthur Monnier is a Master’s student in Artificial Intelligence and Engineering Systems at TU/e. He is particularly enthusiastic about applying machine learning methods to critical challenges in scientific discovery and drug design. His research focuses on improving the selectivity of generative models for ligand design. Outside of his research, Arthur finds joy in playing the guitar and tennis.

Bram Boerenkamp

MSc Student

Bram Boerenkamp is a Master’s student in the Biomedical Engineering Department at TU/e, driven by an ambitious vision of a world where every disease has a viable therapeutic solution. Recognizing the potential of artificial intelligence to accelerate drug discovery, he joined our team during his bachelor in biomedical engineering to pursue this goal through computational means. His research centers on the de novo generation of molecular glues designed to address a therapeutically relevant challenge aligned with his broader interests. When not engaged in research, he channels his energy into cycling and mountainbiking.

Tanja Vermaas

Secretary

Tanja Vermaas is the secretary of the Molecular Machine Learning group at the Department of Biomedical Engineering, Eindhoven University of Technology (TU/e). She joined TU/e in 2017 and provides essential administrative support to the group. Please reach out to her mindfully, at: a.m.j.verhaag [at] tue.nl

Alumni

Giorgio Carbone (Guest PhD @UniMiB)
Derek van Tilborg (PhD @Biomedical Engineering)
Ben Adams (MSc @Biomedical Engineering)
Katarina Elez (Guest PhD @FU Berlin)
Inge Groffen (MSc @Computer Science)
Laura van Weesep (MSc @Biomedical Engineering)
Sanne van de Vorst (BSc @Biomedical Engineering)
Alaa Bessadok (PostDoc @Biomedical Engineering)
Bram Boerenkamp (BSc @Biomedical Engineering)
Yves Nana Teukam (PhD @Biomedical Engineering and IBM Zurich)
Antoine Argante (BSc @Biomedical Engineering)
Hugo ter Steege (BSc @Biomedical Engineering)
Vera Wentzel (BSc @Biomedical Engineering)
Rebecca Birolo (guest PhD @UniTo)
Sarah de Ruiter (BSc @Biomedical Engineering)
Meilina Reksoprodjo (MSc @Computer Science)
Francesca Mori (BSc @Chemical Engineering)
Joelle Bink (BSc @Biomedical Engineering)
Laura Lemmens (guest Master student @UAM)
Lisa Nooren (BSc @Biomedical Engineering)
Max Pordon (BSc @Biomedical Engineering)
Silvia Multari (guest MSc @University of Milano)
Teo Yordanov (BSc @Chemical Engineering)
Viktorija Mamula (MSc @Industrial Engineering)